NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222623_10295475

Scaffold Ga0222623_10295475


Overview

Basic Information
Taxon OID3300022694 Open in IMG/M
Scaffold IDGa0222623_10295475 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)622
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9201Long. (o)-106.9487Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005536Metagenome397Y
F007604Metagenome348Y

Sequences

Protein IDFamilyRBSSequence
Ga0222623_102954751F005536AGGAGGMWDDSPDCPACATGWHTRCRWPELADDGDGELVERCCDGLLIARRRRPLWTR
Ga0222623_102954752F007604GGAGMPNDPTRRSALSVALLAHPNSRYDIDCWLASTGQPHGSVRYDTDRAWFTIQGRPAALRELAQALVACAELTERTYPDPAPAVVEEVAG

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