Scaffold Ga0248483_159474

Overview

Basic Information

• Taxon OID: 3300022691
• Scaffold ID: Ga0248483_159474
• Source Dataset Name: Soil microbial communities from Calhoun CZO, South Carolina, United States - 60cm depth
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Colorado
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3954
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Cross-Czo Soil Depth Profiles

Source Dataset Sampling Location

• Location Name: USA: South Carolina
• Coordinates
  • Lat. (^o): 34.6074
  • Long. (^o): -81.7228
  • Depth (m): .6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004349	Metagenome / Metatranscriptome	442	Y
F006952	Metagenome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248483_1594742	F004003	GGA	MTGVTRIAAAMVASALLAACGGPGAGPPSPQDILSKPNHANLKDAHFLVTGKGNNPGTVVDINGDGTIVYKAPGAGRFKFQTSVAGQPVSFEDISINGTDYTFTVPGNGKWTATTTSSGLGPGSFTGASEFAYVGEENLPNGKAWHAKAKDKDGNQFDGWIRESDGYPLKYQITQGSAQGTNQLTLNFDKYNTGESIKAPPASQVVQG
Ga0248483_1594743	F004349	AGGA	VKTRTWLVLSMSALLVAGCNNNAGAPARPPTAQAILSKPDAANVKDAHFNLVAHIVSGNIAFDATGDGIIVVKPEQASRFMMLTTISGQALKFEEIIIGGKEYDLSPDNPRWTVRPSTNSSNPSSFKGTDATYLGEETLAQGKAWHVKAKDENGNPFEAWVREKDGYPLKYASTMQGSTFTATFDRFNTGQTVSAPPASDVQSSG
Ga0248483_1594744	F006952	GGAGG	VSGPLGSANREIREAERRDQERRLARLVEPRRLTDRLLGQLEELNLDGVGTVPEGYEPALAELRDQLEGLGGVRPRLIERLQSGLSTADMIETVFIIQEIISPPRLPSGSLPYDDAEPS