NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_121728

Scaffold Ga0248169_121728


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_121728 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3847
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001201Metagenome / Metatranscriptome749Y
F017776Metagenome238Y
F038015Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_1217283F017776GGAGMDKVTLSTTLVNNIMAYLGTRPFQEVFQLIEAVQKEAQAQQTAPAEAPNGN
Ga0248169_1217285F001201AGAAGVDPFTLVALASGAFKLCKDACEMYKEGRQIVTDIAHEVDGVVKDVKAVQKKAKGLLGFLSAVFGKKEEEQPQVAQPAKKVKKKKEPPPEFDENLIYQQVSDALIKFFQAYNSLKNYVKEQEEFALHANNDEGQEAAIKITIANLQMEKLNQELSDYMIYHVPNELKDLYTRVNQQIGHIANVQALARREEMLKERRAKWQRRQKADLIRGRMVASAITVLMLMWIWLMIISLTHSPSY
Ga0248169_1217288F038015AGGMIAWLFGDLFYWIALIALVGGAILYVLSYFVGYIPMLKAHAMICKVVGLVLVILGGYYVANQNGYQRRVAEDQAEIDRLNAEARAKEAELSIKLARASSQLKKAKDDIKTKQASIDARIDAGELHIGSQCSVQADANTTPSAGNTEDGAKFEREILKTINAITNEGDLAITQLNACINTYNQVMQTVNEGVK

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