NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_117803

Scaffold Ga0248169_117803


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_117803 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4572
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038982Metagenome164Y
F043765Metagenome155Y
F100256Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_1178032F100256AGGTGGVIRVDIMSPEFNTAYTNAMRALPVATLERPRQYGYRWREAYRCRMDPRIDEGRTYMIFDNDEDYTWFMLRWG
Ga0248169_1178034F043765N/AMNYYYELDPRTRKANEQQWLYWVMPNCSPAEGGWMDFKLHDDYVANSSKVWLENANGVYLIKPRWEAHRHIVDTKEFTMIKLKAKNLIRHYDEAWP
Ga0248169_1178039F038982AGGAMSKLSDTLKAAMNKKKGIHHPETGDAPAVEKKAKKTAAPVIGKKPPTRSAGRGR

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