Scaffold Ga0248169_114506

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_114506
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5466
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011824	Metagenome	286	Y
F068392	Metagenome	124	Y
F104705	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_11450610	F104705	AGGAG	MTRKHFVAMAQEIAQMPDRKSARTVAEAFAQVARLTNPRFDFNRFYTACGV
Ga0248169_1145063	F011824	N/A	MTSPTYRSGEPLFTIIVRDPEARTLLTRWSTSSKSIAARVEDNRMHLFDHNTLSLFVVTWEHGWDRLVVWDPWTKRHLTF
Ga0248169_1145064	F068392	N/A	MLEDLEIDQSIRLTILNLMVVLYDCGITEIHIGGVMRILGVPNEKAQAHDNELLVIDENFVKYVEQISEPRPVDQPLH