NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_113929

Scaffold Ga0248169_113929


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_113929 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5674
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027373Metagenome194N
F050052Metagenome145N
F068451Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0248169_1139293F050052GGAMIYKTFKQWVKSRFLEIGEPRKKAYSKDEFALIEMGWGYGYDAGVLVEREQCAQIADEWVLAYPHPSKVIAETIRARGNNE
Ga0248169_1139295F027373AGGMTEQKTGFNIYKPPKPVGYWCLYGGGHTTKFAMFQKPTDEQIKNTTELLGWIWEDAK
Ga0248169_1139298F068451AGGAMTTATALKIVDELGLIQDQIEQLMEQAESLKDQIKLLGEGTYSGTMYVTQIKHTAEKKSTSWASVAKEMNAPEALIKKHTKVTLNHLSATTTALSN

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