Scaffold Ga0248169_112040

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_112040
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6440
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021219	Metagenome	219	N
F071820	Metagenome	121	N
F086514	Metagenome	110	N
F091105	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_1120403	F071820	N/A	MSRQRLKATSWASLLQHEIKATEKKPVGKGWKTAKELQREFKVGERKLYEILAKLSREKRIERFSGFIINDSGQKATRAWYRVKRSA
Ga0248169_1120405	F086514	AGG	MMINPLNAICVQSGIPNSNLQQESIDEPIVAARLHEMDIKEYMRELGRKGGKARAAKLTPEERTRSALYAVSMREYLKELKKKKSS
Ga0248169_1120406	F021219	GAGG	MKTDPTLDVTPVNVTIGSTWVDACATPFNKSVIEIVNRKGNYVQFKYIILNNKPWDTENTYSCSLDTFHVGWIHPESEKAKANEMGLSLEDYRAFVLEQEIEELEWQRYLREKRGHDKYYEEAPV
Ga0248169_1120409	F091105	AGGA	MIQQTGTLGHITAISPTGDSFESQYGTMYVHNIEFASGTKGTCNSKTPLPKYKVGDSVYFTSSPDKVTKANKIKILGTETFHAKAGIRAENYKQAEQIGFASASKPAYNPDGAALGNAKNIAKDIVIHNARVQNVILKPDELENGDFQEFVRIVLKTQ