Basic Information | |
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Taxon OID | 3300022602 Open in IMG/M |
Scaffold ID | Ga0248169_111561 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | U.S. Department of Energy (DOE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6670 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008072 | Metagenome / Metatranscriptome | 339 | Y |
F016782 | Metagenome / Metatranscriptome | 244 | Y |
F017814 | Metagenome / Metatranscriptome | 238 | Y |
F086809 | Metagenome | 110 | N |
Protein ID | Family | RBS | Sequence |
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Ga0248169_11156112 | F008072 | N/A | MKRKVSKDRRYKRSIWTQNQKLEAVSTYLMLGNMAETAVVTGIPLQTLKVWKTTDWFKDYSLQLQSEDVQQMDSNLKRVIQKALKATEDRIDLGDAQFDQKTGEIVRIPIKAHVALKITTELLTKQQKLNENPIKEEVEKTIDSRLLKLSEEFARFANARANTIEIEAVDVTPNTTSIEA |
Ga0248169_1115612 | F016782 | AGGAG | MSTEASTLYVAATESLVSESSATSTFEKMIAVAFTHSSGETFSKELRETEKQIKKDFEISSMPGPWRSAKSVIQTALKMGIGLVDDNGGFYGKTHLQNKIKEMKVVPVPLDAKGYADKVIKLLINTPAEISQKEVYHAVIDYLESVI |
Ga0248169_1115613 | F086809 | AGGAG | MMIDLVDEMDWEDSDKVQKLTLEEAGYEEEMLVEETHLHGKVFRSGIHAYLDWFYDGSIENGDY |
Ga0248169_1115618 | F017814 | AGGAG | MSQQNTFDFNGFNALTERKPAGLQIFLAQQLLSNALWTMENYDNPRQVEVRDALNALKTLRVQLKADALARA |
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