NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_109578

Scaffold Ga0248169_109578


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_109578 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7859
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (72.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015062Metagenome257Y
F016499Metagenome / Metatranscriptome246Y
F048757Metagenome147N
F055446Metagenome138Y
F058556Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10957811F015062N/AMRTKTKHKVNAVAPRLSDEDPDPIEQDDAPDGYHLLQEGWMPWDAEDMNDIRKLISEYMPAKQRFVLQCFLDGLSYSEVGLSEKHWRYHFAKGVEFIKKELKI
Ga0248169_10957812F058556AGGAMTTFIVEHIHNGYPMFDSITGVEDIDLTMFKNIQTLWVCDTPEEIEAVESELRRKHERSS
Ga0248169_10957817F048757AGGMLHWLQPRRIQVNLKQLLKSAGVSNNIIKEVERKAKQTTAQQEIEHQEKAAAMAKMMLNDVMPHLHSAMSKTPPSKPKKTIIIPD
Ga0248169_10957821F016499N/AMAQTVLDLGKQGASQKAMYAAIGISKTTASKWKQEDPEFAETMDLATTYGQAYWENMMLANIDNRGFNSRVAEIALRGQYPDDYKDNREVKATVKQEVTIDFNKEIADLISALK
Ga0248169_1095789F055446GGALKKKYDYYKLDVGFFPPVIKLCFDDAVFQQILKDHNIALKANALEIGIAETHMVGDGKDAIIVLVFDMDLIGDDNIADLVDTIAHEVSHTVDHLAEHIGEEDGFKGETRAYLTGHLATQIFKICMHEKAKHVRKASRKVPNKTGERKRGPELQVDQLSVGGAGSNSFPSGAGTSR
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