Scaffold Ga0248169_109308

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_109308
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8039
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038050	Metagenome	166	Y
F041723	Metagenome	159	Y
F056409	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_10930816	F056409	AGGAG	MTPMTERQKKLVANNVLAACKDINKLNKTGYDFLYLCSGFIAHYNIDGFKAHYSEYSLKADLERYAKANQWCNFRKDEKDGEYYHAKRDCYNMILGGFVADEARTLMQAAQAMGKLQIIHIG
Ga0248169_10930819	F041723	GAGG	MKEISDLQKQILGNAGHVKFFTQQEFDEAMAIAQAEIMTVAIETTKRAIFIERQACSDLVRELAAAEDEGETCTALKNAAEAILNRIPSQRQ
Ga0248169_10930820	F038050	AGG	MKRYFSIIGYCMTPFVVSYTFWYVIGAGISASWDTANWTMDLKVTLTVWACVFAIMLLFKLEHKK