Scaffold Ga0248169_108972

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_108972
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8291
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015302	Metagenome	255	Y
F030333	Metagenome	185	Y
F032569	Metagenome	179	Y
F034448	Metagenome	174	Y
F089853	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_1089723	F089853	N/A	MKIASIMPPDVKPYAGWQPCIDWCSQHCSGPWLFISEGVFEFELDADYVLFMLRWS
Ga0248169_1089724	F032569	GAGG	MIRVNVLDPAFNTAYWNAKRTLPVEHLELPRQYGARWREAFRCRVDSKSSTGKFGTVYYIFDNDADYTWFMLKWG
Ga0248169_1089725	F030333	GGA	MAIDRNPELTVPVKTYAHYTECEPWCICNIGEWNAAWWRDFPDMAMSVALGQVPQPETYWFTSEQDALMFRLRFS
Ga0248169_1089728	F015302	GAG	MKDEYYQDSAARLDTIIGGDTQHFLRLQRVKNEWDALADAVPVGQGFLTFDDYVREYYGVKLQYDGDNVSLAYSVVDEKKHLMFLLKFNR
Ga0248169_1089729	F034448	N/A	MHANNYVLPRPAESVLDQCHLVVINDPAFRMWAMKQFCKENELSLIWSELLDTSDVSTYIDESAGFWFIDGRDATIFSLKYK