Scaffold Ga0248169_107022

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_107022
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10213
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004924	Metagenome / Metatranscriptome	418	Y
F008554	Metagenome	331	Y
F023104	Metagenome	211	Y
F029335	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_1070221	F029335	AGGAG	MKTITTLRNGNIYQMDITEAIEIVEAYKRVNGHPGILEAVQEMGDLVALDELPTIQKVAYRRFMKDMQALFAPKEVA
Ga0248169_10702218	F023104	N/A	MKIIDLRLELTSPFDRWDYFRGLGSISGKLARYTAWELEHSYYSPLLLDIELSWSRQQDHAGFEFGLGILGYGVHFRVYDTRHWNYEAQRYEVRDFSEYFDLKFKD
Ga0248169_10702221	F008554	GGTGG	MTLEDMVMEKMANSIASDIDREVLWGMLTGIGWTRVMVPRLIDNEHAIDITYWLEDNCKHPFERNGRDFIFESQQDANWFTLRWMS
Ga0248169_1070227	F004924	AGGAG	MKDAILVKLAEVEAMLLTATCDGVQLAELECFNEVENAMSTLLQTVDYYVD