Scaffold Ga0248169_106354

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_106354
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11130
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028709	Metagenome	190	Y
F050111	Metagenome	145	Y
F056283	Metagenome / Metatranscriptome	137	Y
F074332	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_10635413	F028709	AGG	MNIELDEVYTFKIANGDEIVARITAEDDTTYTVSRPLTVVPGAQGINMMNSLFTANPEKSVTINKQQVSIIAPSRDEVCDSYLEATTGIKPVRSSKILMG
Ga0248169_1063544	F050111	GAGG	MDSKKLYNIKMTLSPKDIMSFVSDLHDVQMDMIETVVARKQREGFPEASAVIEHIRNLK
Ga0248169_1063547	F074332	AGGA	MAYEYLDKYSVEELQGYFSDFHKDFYGHRPRFGGPEEWRSRSWLVVNIDAIHNAMDEMKKTYSGREALRIQGWVIDEAEFNDIIDPEEYANWSADQDAIYYGA
Ga0248169_1063548	F056283	AGGAG	MFETLVDQLVKVTLTNEPVKTEFYNGTLFVRKINETQARSVFHRLSQTFGLGSVIVSPIGNTGEYAYDFIADKATEELSPYATVNS