Scaffold Ga0248169_105301

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0248169_105301

Scaffold Ga0248169_105301

Overview

Basic Information
Taxon OID	3300022602 Open in IMG/M
Scaffold ID	Ga0248169_105301 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	U.S. Department of Energy (DOE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12923
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.0412	Long. (^o)	-89.6861	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025611	Metagenome	201	Y
F042171	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_10530111	F025611	AGGA	MRIALCFSGQNRTGHVTADNIKRYVGNLLPDCDVFAHFWDSESRGTGYANRLGVPSTDIIWHSPKTTNPEKNVEFYRQWRPRTMMVEEYDLQPNRPKWGGRRWDPVAEQWQVSMWRSLYEANKLKMDYAQKNQIVYDYTVRLRSDLVMDASKSLAEDLKLLTDDNSMLFGDHYSIWPIHGMTRIEDIFWIGPGRVMDQVSTYYSAYPSTVSNIDNPQEPGYEDWQWHNAKWIVTMLGHKFWPLHNNLMRIYTEQDIDTGIDPMDPGFGPPGRPGAFNNKNI
Ga0248169_1053012	F042171	N/A	LEDTPYIPHEVVSAIRKLARMASDPYSDGFTQCVYKRDLYVLKCFIEDQYNNCPEFPTQEKEWEQERLIEILKRK

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