Scaffold Ga0248169

Basic Information
Taxon OID	3300022602 Open in IMG/M
Scaffold ID	Ga0248169_105245 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	U.S. Department of Energy (DOE)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022602 Open in IMG/M

Scaffold ID

Ga0248169_105245 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

U.S. Department of Energy (DOE)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13016
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (75.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13016

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (75.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.0412	Long. (^o)	-89.6861	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.0412

Long. (^o)

-89.6861

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008860	Metagenome	326	N
F040987	Metagenome	160	N
F067353	Metagenome	125	N
F091222	Metagenome	107	N
F096503	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_10524517	F040987	AGGAGG	MQSTTLQRGAEERKVVLYKNGESFLITCEVLASLFHEVGHTETLYTPKSEAQAEFLFGSAVRFLQGFQYIVTDGVLA
Ga0248169_10524518	F067353	AGG	MSKNAERMIRDKNQALITLNALNETLINDLVRRASTRATVDQSPDEGAKSKGGISNPTLNAVVRTMSGKKVADPIYDSVKELAVMLSNIAELAQRIDERVAFITDTKSRIRELVVVYCEACQREVAGTVSDRIRSGYCQACYQAWRREGMPSRYQFELQRREELAETVEN
Ga0248169_10524523	F096503	AGGAGG	MFKLNYRTGRKLVWGTAAIVFMYVDLTAQGGISFWATVYGLGTAVVVATLLALITK
Ga0248169_10524528	F091222	AGGAGG	VKLIDTLTELDFVRESEGDFSNTYRATGFDLRSNVFVNESLSENQVQVCLMPYDPDDEPLWVTFSKYCSAVDNLLKLWTGKDD
Ga0248169_10524530	F008860	AGG	MSAFVKSDTRTPVPGDIVFAHSNGLMGRAIRFGEMLRWRKGSHWNHACVISRVEQDGTAYVIQADIRGVNEARLDSVGQYVIIELPYGVNRNKVLAFTKAQVGSKYGILSILSIVFDILSPNWFPSLRMPRTWICSAVTGEALRYGGWLQNWDDLYCVTPAQLFDALVNTL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0248169_105245

Overview

Ecosystem & Geography

Associated Families

Sequences