Scaffold Ga0248169_105151

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_105151
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13220
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (94.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008554	Metagenome	331	Y
F023104	Metagenome	211	Y
F030373	Metagenome / Metatranscriptome	185	Y
F083613	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_1051511	F083613	AGGAG	MGYFTDTDFDSTLDMIDAVNEVVERHVRKMESCSPTELGLDVRCGPVYIDRDEEVIAVTHSSAIDYYGGFEYIKEDEGRKTCGDYTFFTTESSRVQDCFDHLNDVEKEVE
Ga0248169_10515116	F030373	AGG	MYFDDEYQQMARDLDAMERQAVQDSEELRQLRAGERIIVPVDVEHARTMFKLATYYLSQHDKEFTLELK
Ga0248169_10515120	F023104	N/A	MNILNLRFEFTNPFDRWDYFRNLGCISGDMGMYKAWELEHTYYSPLLLDCELRLTHRQDHPGFEFSIGILGYGIHFRIYDTRHWNYDLNCYEERDYSEYFEINH
Ga0248169_10515130	F008554	GGAG	MGRLSEYDSLEQEIINGQAEQMSREVDREILWSMLQGMGWTRVMLPRLLDNMHAIDITYWLEGNCKNNYERSGRDFIFESQQDANWFKLRWGSE