NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_104297

Scaffold Ga0248169_104297


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_104297 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15260
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (89.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F008554Metagenome331Y
F062427Metagenome130Y
F083613Metagenome / Metatranscriptome112Y
F091089Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10429712F062427AGGAGMSKALVKRINKAFGRIYDLGDSGLDYMDGHVALDAALMQHFYDETLDTLSKEMLETLAVQLETVVADAEFDLEA
Ga0248169_10429713F091089AGGAGMFNTLAKAKLVYNKKVQAYKLVVAFNVHTTTREDKDGNTKVVHLFPVQSKCAYVSGDLLKSNIKNELARALKCASAVARTDNILIVG
Ga0248169_10429732F008554N/AMTLEDEMIEQAAKQMSNELDREILWGMLQGMGWTRVMLPRLIDNHHAIDITYWLEDNCKHSYERNGRDFIFESKQDANWFKLRWGTE
Ga0248169_1042976F000652GGAGGMTGFQSKRAMANSKGAGMKTVRVETLLTQEIEVPDTWEREDVLDFLAEYQSFRGAFQGVSNEEQTARIVDLGVIEETIKELGEEAYDD
Ga0248169_1042978F083613AGGAGMGYFTDTDFDSTLDMIDAVNEVVERHVRKMERSSPTELGLDVRCGPVYIDRDEEVIAVSHSSAIDYYGGFEYIKEGEGRMVCGDYTFFNTESSRVQDCFDHLNEREIEESE
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