Scaffold Ga0248169_103922

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0248169_103922

Scaffold Ga0248169_103922

Overview

Basic Information
Taxon OID	3300022602 Open in IMG/M
Scaffold ID	Ga0248169_103922 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	U.S. Department of Energy (DOE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16292
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (19.05%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.0412	Long. (^o)	-89.6861	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007255	Metagenome / Metatranscriptome	354	Y
F079583	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_10392218	F079583	N/A	MASVGSEFLYHLVVNNIAPIMASSVAGVYTSYFSGRSAPTPTLIRSDIDDERELDLLQMDRMLKWMSLIFEDSFVTIEKPSERTATQESDTPNLDDTHKAYKKELYNIYITICSDFRQYQNWKKYNSNIWVFSSYRNKNTKGLARKILGDVKLFNEGLKMFSMFDKL
Ga0248169_1039227	F007255	GGA	MDPPNQLEWMIMKNCSADKRGVFFSHELEMMPIWFPWMLVGGILFIVMSFVGARYKDKEYKNIQFAQDFISGSILIAFTGILVPDLFPVIEFPTSLPSFSGVSMGEEMELQVGPPRLVGR

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