NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_103825

Scaffold Ga0248169_103825


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_103825 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16606
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (78.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006060Metagenome / Metatranscriptome382Y
F034813Metagenome173Y
F083691Metagenome112Y
F085161Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10382525F083691GGAGMSISAYKEITEWDNSEFVVPNHVYLFDGKSNILAYAKASNDELVILHKPLPIDTRRRKFIKVKHEALDSYGATVVLDVPNLENTPHWSVKSDSGKTYTVTLESGRYTCNCIGFAYRNKCKHSEQIKEAQEK
Ga0248169_10382539F034813AGGAMSYDSDFESVYMVEFESGRTIHVQFFDVEEVKEYCGDNYPNDTIKTIYKEVYCNFAEAE
Ga0248169_10382546F006060N/AMLVVFAGILYNGTLLIIKSFQSKTQKRGFMLKFTGVAKVGDIIRAYDFKPMAGRDDAFIEGIVIDANNMEGGYKAFKIEVTSDKFKKYETKAKKTNRVGALMYVPHETGFMEFDFRVVNLSKV
Ga0248169_10382547F085161AGGAGMEVYIVKSFGPENGWVNLKVFDNNDAAVSFANNVEKQIPDDVEDEFVEIECFTVRSW

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