Basic Information | |
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Taxon OID | 3300022602 Open in IMG/M |
Scaffold ID | Ga0248169_103825 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | U.S. Department of Energy (DOE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16606 |
Total Scaffold Genes | 50 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (78.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006060 | Metagenome / Metatranscriptome | 382 | Y |
F034813 | Metagenome | 173 | Y |
F083691 | Metagenome | 112 | Y |
F085161 | Metagenome / Metatranscriptome | 111 | N |
Protein ID | Family | RBS | Sequence |
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Ga0248169_10382525 | F083691 | GGAG | MSISAYKEITEWDNSEFVVPNHVYLFDGKSNILAYAKASNDELVILHKPLPIDTRRRKFIKVKHEALDSYGATVVLDVPNLENTPHWSVKSDSGKTYTVTLESGRYTCNCIGFAYRNKCKHSEQIKEAQEK |
Ga0248169_10382539 | F034813 | AGGA | MSYDSDFESVYMVEFESGRTIHVQFFDVEEVKEYCGDNYPNDTIKTIYKEVYCNFAEAE |
Ga0248169_10382546 | F006060 | N/A | MLVVFAGILYNGTLLIIKSFQSKTQKRGFMLKFTGVAKVGDIIRAYDFKPMAGRDDAFIEGIVIDANNMEGGYKAFKIEVTSDKFKKYETKAKKTNRVGALMYVPHETGFMEFDFRVVNLSKV |
Ga0248169_10382547 | F085161 | AGGAG | MEVYIVKSFGPENGWVNLKVFDNNDAAVSFANNVEKQIPDDVEDEFVEIECFTVRSW |
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