Scaffold Ga0248169_103353

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_103353
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18323
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (74.36%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019426	Metagenome	229	Y
F028070	Metagenome / Metatranscriptome	192	Y
F028168	Metagenome	192	Y
F041564	Metagenome / Metatranscriptome	159	Y
F042147	Metagenome / Metatranscriptome	158	Y
F064358	Metagenome / Metatranscriptome	128	Y
F071905	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_10335314	F042147	AGGA	MLANGTLPTIEDEQDIYVSLTALCEYFAQSSVNMRQEIKHTNPTDKRYASGLYDMMHTIATEMIELGKYEAQRRMIESPEDLLKLIDKAGNGLVE
Ga0248169_10335327	F041564	GAGG	LEYDPSEEEHREIMEYLISEGAAILDGIDEDSEPVYRFDMEILEEVMPELYTVMQDDMDNVLIDLYQKGLIDVSYDENLNALMTISEQGKVALAEAGFALNDEEDTEY
Ga0248169_10335330	F019426	AGG	MRVLVFGSKDWQDYNDLIRQVTVLIDDRKHFYPDDKEYVFIHTGLKGAENMITEYIGKTEKFLRQKGYKIKEELIRDKGSLSDVHMIESLPDFALVFGESTRNKMCVKLLETYGIPFRHIKQ
Ga0248169_10335334	F028070	AGAAG	MAKIRYTVEMAKKVREIKVPVKNLKLDIRARPNYLALTVYEENVMEYNESQRMQLMEYLLLVRQLIMAYGTPCEIEGIKSNNVQR
Ga0248169_10335336	F064358	AGG	MLCFSCSKQKNELHPCKSSILEGVSLFMCQSCIEDKYEPRWVIILAGRQMGAEHVKDYIVKHRYFGKPISAEEIIA
Ga0248169_1033535	F028168	AGGA	MTDKPVIELISELTEFNDIKAYMNDADLDYALDLIIKLIAKPDVPSTKAPDLIVKMQALSAKFAMMSRYYTTFEKGGENSKKKNVYYTAEEAIDKLVAALKYSMKGNY
Ga0248169_1033539	F071905	AGGAGG	MAKSTKLWDNKDWVVKRYVIEKKSVLDMAMEARCSHMTIQRALEKFDLIKKPRKWTK