Basic Information | |
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Taxon OID | 3300022602 Open in IMG/M |
Scaffold ID | Ga0248169_103286 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | U.S. Department of Energy (DOE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18585 |
Total Scaffold Genes | 60 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 47 (78.33%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001008 | Metagenome / Metatranscriptome | 807 | Y |
F004924 | Metagenome / Metatranscriptome | 418 | Y |
F008554 | Metagenome | 331 | Y |
F023104 | Metagenome | 211 | Y |
F046749 | Metagenome | 150 | N |
F050811 | Metagenome | 144 | N |
F071946 | Metagenome / Metatranscriptome | 121 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0248169_10328613 | F050811 | GGAG | MMPLHSGLLLEHEYTVVEINDRTLVHDWLVESFGNPGTRWFYNGNKIYFRDEKDWMWFELKT |
Ga0248169_10328614 | F046749 | GAG | MRDPNQDFYNQMEMQVRDSNRPLRRLKRQPLSQVNDWDVTMSDEMLYQQVYAEEVPCVEILMPKDRLETIIDYIKYAESEIEKHTTDRQLMARYEKDRVVRLNNPAVEKAYQHYCTLLELCRT |
Ga0248169_10328622 | F008554 | N/A | MTLEDEIADKLGSRMAKEIDREILWSMLEDMGWTRVMLPTLGSNKQAVDITMWIEENCKFAVEHSGRDFMFESQKDANWFKLRWGTE |
Ga0248169_10328629 | F001008 | AGGA | MTKAKHKPYQWIDGETADRITSLNLKDYRAYLKKELKMWKANPKTEDNPDGYWLHPEDVAGSIRRIEALNLIIGDFITTEDTIK |
Ga0248169_10328632 | F023104 | N/A | MNILNLRFELTNPFDRWDYFRNLGCISSMITKFKAWELEHSYYSPLLFDLELRWTHRTDHAGFEFGIGVLGYGIHFRIYDTRHWNPDTNQYEEYDFSEYFEAFH |
Ga0248169_10328650 | F004924 | AGGAG | MKDTILAKLAEVEAMLLTATCDGVQLTELECFNEVENAMSTLLQTVDYYVD |
Ga0248169_10328652 | F071946 | AGGAG | MSGIYDVVQNPIPKTGLFATPESLEQLMEYCQRFNGQERIIAITVATMALNLAHELVEDKILSREIFCQ |
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