NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_103286

Scaffold Ga0248169_103286


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_103286 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18585
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (78.33%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001008Metagenome / Metatranscriptome807Y
F004924Metagenome / Metatranscriptome418Y
F008554Metagenome331Y
F023104Metagenome211Y
F046749Metagenome150N
F050811Metagenome144N
F071946Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10328613F050811GGAGMMPLHSGLLLEHEYTVVEINDRTLVHDWLVESFGNPGTRWFYNGNKIYFRDEKDWMWFELKT
Ga0248169_10328614F046749GAGMRDPNQDFYNQMEMQVRDSNRPLRRLKRQPLSQVNDWDVTMSDEMLYQQVYAEEVPCVEILMPKDRLETIIDYIKYAESEIEKHTTDRQLMARYEKDRVVRLNNPAVEKAYQHYCTLLELCRT
Ga0248169_10328622F008554N/AMTLEDEIADKLGSRMAKEIDREILWSMLEDMGWTRVMLPTLGSNKQAVDITMWIEENCKFAVEHSGRDFMFESQKDANWFKLRWGTE
Ga0248169_10328629F001008AGGAMTKAKHKPYQWIDGETADRITSLNLKDYRAYLKKELKMWKANPKTEDNPDGYWLHPEDVAGSIRRIEALNLIIGDFITTEDTIK
Ga0248169_10328632F023104N/AMNILNLRFELTNPFDRWDYFRNLGCISSMITKFKAWELEHSYYSPLLFDLELRWTHRTDHAGFEFGIGVLGYGIHFRIYDTRHWNPDTNQYEEYDFSEYFEAFH
Ga0248169_10328650F004924AGGAGMKDTILAKLAEVEAMLLTATCDGVQLTELECFNEVENAMSTLLQTVDYYVD
Ga0248169_10328652F071946AGGAGMSGIYDVVQNPIPKTGLFATPESLEQLMEYCQRFNGQERIIAITVATMALNLAHELVEDKILSREIFCQ
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