NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_103236

Scaffold Ga0248169_103236


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_103236 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18821
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043282Metagenome / Metatranscriptome156Y
F057196Metagenome / Metatranscriptome136Y
F085212Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10323619F085212GAGMRAFQETTKDWVGNVTNHIYYLTDNKEKLVAFYNVNTGVVKKFKKPIRFDMRYRTFKELKHK
Ga0248169_10323621F057196AGGMFKSKAELRVETENAVKKFLKQGGSIEIVKSRKAPKMLMRGKTSRVASTGTSGFAVGFPKKSFV
Ga0248169_10323622F043282AGGAMIKVNVRDVIRSYDFKPMVGREDCFVEGEVLALTNEQGYDAYKIRVTKDSWSDSEDKGRVGKIVFVPVEVSFMEYAGRVINLSRI

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