Scaffold Ga0248169_103166

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_103166
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19100
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006255	Metagenome	377	Y
F014955	Metagenome	258	Y
F017287	Metagenome	241	Y
F064337	Metagenome	128	N
F086796	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_10316612	F064337	AGG	MNLTEMREDLCTQKRVSRSRVTYDINYDQEVIYTQEGWSDGQNTVWDNEIGIVLVDALSKHKKAQE
Ga0248169_10316616	F017287	AGG	MDTYVRRVFEAEAPCDKCTQKADCQEFELACRAFSYYVLHGTFHHHTARMPTHNMFNKIFKEDDKALKNYLKSIKTREEMGQNDFFE
Ga0248169_10316622	F006255	GGA	MGELNQLMLEHEEFLEKALDDMEFSNEFMSQEQVDCIRQACGKPRNAQVNPVLRDVINSFGEIFGNPLESFPSIRGQK
Ga0248169_10316629	F014955	AGCAGG	MGKMDIEKWIVAATGLGYLVVGLAQYFKGSTSNAFIWLGYAAAQIGLWMNLK
Ga0248169_10316632	F086796	N/A	MTDYSENYLKLQRLMKSYHNATLKCDFDKATKFAHELSDEAIRLEIATIKALKNQWLS