NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0248169_102872

Scaffold Ga0248169_102872


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_102872 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20515
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038015Metagenome166Y
F079517Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_1028723F038015AGGAMISWLFGDLFYWIAVIALAGGTIAYILSYLVGFIPMLKPHAIIMRVVGFALIVLGGYYVSDQRGYERRVAEDKAEIERLNGEARAKEAELNTKLARATSQLKQAKDDIKTKTASINARIDSGELRLPSTCGLQANSGSTVGDGAVGAESDRQAIKDIVQIAADGDSAIVSYNSCIARYNQVMETVNEGVK
Ga0248169_1028726F079517AGAAGGMIPVINVSPNLPQPPMEYDQQYFDILTKVLRLYFASNDNINQVGMNQVSTNQALIWLGV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.