Scaffold Ga0248169_102385

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_102385
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23536
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (90.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009449	Metagenome / Metatranscriptome	317	Y
F078405	Metagenome	116	Y
F082373	Metagenome	113	N
F096596	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_10238528	F078405	AGG	MRQYEYQITNKRTGRIEHARATAATAVIAHAQIVLMYGQQFDINELYSDSNPPHYILGEIDCSGFPVSDTAWLIQQADKVQGI
Ga0248169_10238537	F096596	AGG	MTHTEHAYIEAGYRFETGKTQADTLRAMLEKEHPHDRTEARRLIEQGRAEARQH
Ga0248169_10238539	F082373	GGA	MNYEAWIAEKVNSGKEASISLCLLEKLIYEPAIKHWIESTAKKLGCKATIHWKSDVVTFYPVSAI
Ga0248169_1023855	F009449	AGGAG	MAKMKHDDIAEDKKLIKKAFSMHDKQEHPGKKTNLSKLKKGGITGKEMRAVGRNMARANNQRGG