NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_102186

Scaffold Ga0248169_102186


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_102186 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24905
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (73.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053029Metagenome141Y
F071904Metagenome121Y
F086508Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10218613F086508GAGGMSFADLKITELRKVAQSFGVDTSGIKTKQEVVARLEEEGVSYQMYNQFVNTEKAVIEMPEVEKKKREQKTVNKANQVLVKMERKNFSYQVGKHTFTTDHPFLAMSEEEAQSIFDRHSGFRLATPREAQEFYS
Ga0248169_10218614F053029AGGGGGLQTINTNSQQNIQLQVYIDGMLSQADSLPTLSIYDANNDANPIAGFSNVSAVDEAPPGIYSFLLTPAITNINRVLEVRWYYTINSVPVTQTDFYAVETPYSTVSETMDFLGYNSVPSEINYMDPKSVVSAEKVARTIIEGYTGIKFYTYYGFQEVYGIGANSIELTEKMLTLDQIWENQILVADYTQNPVYDTFGVGVEISPTGYQLRIWYPGWDNGWNNEMDPTILYPGRFRDTYLYRFVGQIGYKYVPEDIKLASMLLIQDILSNDYNWRNKYLSKVNLSEISFEMAKGAFNGTGNIVVDNILDQYRKANIVII
Ga0248169_10218617F071904GGAGMTVDYSKIAAFDVRNAMWAALQTVGILDPQDYYADGLPDPLVPIIPSQQVPEFNNLLPGKTYITYDIVQKNYGVQWWISEESMVMQVVSRDNTKIITVSNFLTDLFRRYELSAKDINDVAYSAGSPFKFLYFKLESANPIQPFIDEGGYMSGDITINYTYTRQVDEGVNNTGRYI
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