Scaffold Ga0248169_101368

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_101368
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34332
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (92.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F037510	Metagenome	167	N
F049367	Metagenome	146	N
F050812	Metagenome	144	N
F098365	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_10136855	F050812	GGAG	MNEVLTAGFGVSHKGVGLSVNTTHDGSTITFTSGDIIKDILTDPRTTDNGKSVGERNIDWLHEKLDEWIKKQLEKNT
Ga0248169_10136856	F001629	AGGAG	MNFSQGKLADSLVEEMLELIHKYDETLYTATAIGCLELVKQQLIIDAMESENE
Ga0248169_1013686	F049367	GAGG	MALKLNLGTTQFGAPAPEAYARVTNFFGNKDNIQVQVSVHFSKDARDSNLSPVMEHAHYIGLADLAGKGELMTAIYTVLKTMSQYQGATDV
Ga0248169_10136860	F098365	GAGG	MTEEYTFYSPPKPNIKFRLGKDSNITFHSHIPKPPNAFQRWLLKILLGIYMELI
Ga0248169_10136861	F037510	GGA	MIKLTYEHICDGCKKTLDTEVYECSDYPGMEFPKTHRMFSFHWRGINAQLCKECAKPLYEAQDRTMEIIIANRGQE