NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_101223

Scaffold Ga0248169_101223


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_101223 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36920
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (20.51%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058734Metagenome / Metatranscriptome134Y
F063402Metagenome / Metatranscriptome129Y
F078284Metagenome / Metatranscriptome116Y
F079412Metagenome115N
F091108Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10122311F078284N/AMDTTTQTTVNEKKRRAPSAKRAATKAQKEQSRGFPLPLYLTCPVTNKTNKYTSLAYIRKLIAKYGTVEKVKKNYVSAEGKKLQNNKQS
Ga0248169_10122320F079412N/AMINWDTLSLVYSAILDPVYKAKKKRNFVIRIRGVKDGRWNWYNSDSKGGYFVIVPNLRIGQFHRVIIHEFRHFIQDKILHVPMTADYEKLYYRHPLEIDARYFENKGLHFARRLYNRIDKQKKIFAILNEYRPKGTETNRNGNTSRSKLRSKRKGSK
Ga0248169_10122324F091108AGGMNKAYLRRQAASKWKDLECGIWERWDYRCCYLVIRQLDNGKFKPMIGAMGDLSMPGADLPPEGYHQLNTLEEAKNFLHKYVAYIREVWDKQVLDGRK
Ga0248169_10122325F058734N/AMTINIIENVKEFTAAEQKSLYNDGADIASGLYYLVADASAFTIQGKEVIPNLPALRSLTASANIGWIITNYRGNKVAFGSATAP
Ga0248169_10122327F063402GGAGMQTLTENVIIKDINTRTLGDESVEQRMNAVTRRFNPTKYNVLGFINRTSQVVLQPRFYNVRDSKGRWAKIRETK
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