Scaffold Ga0248169_100963

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_100963
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42658
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (58.06%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F007405	Metagenome	351	Y
F017785	Metagenome	238	Y
F026565	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_1009634	F026565	GGA	MFSQNTITQVSGFDNPCIAGELVWEQQTYWNLDIVGSDGVTPLDLTSATIDAQIIRREVTNLQDSRYGLSFDIGDYSPTPTPISLTITNEVAAQGKFTLVINDSTWGLMSDDPELDIGAQDCVAYSGRIKISFPASGSNPANDYIIFLLFLIRSDGIVVE
Ga0248169_10096353	F000934	N/A	MSEQVTIMDQRLVGQAISRNQRISTSEIVTVIPFQFTFKPNSYQLYSQNRSLLANLRYYDKSLEQYLNFASTGWVNYIAYQGDMTSVQIAACQWETASAGKNLVLGSLPSISSTSYIVKAGDFCQVDRYAYIATADVMRGSGATVTIPVHRTLLTTLVSPEYAVIGQYGTTVALGGNTYTGCTFPIILQQYPTYNLIPMTNDSFIQWSGPFKAFESVL
Ga0248169_10096354	F017785	N/A	MSQVIAPIQNTNNIRYADFVRIVTPSTEYRFSTAPTAITVSAVDSQPFDGLGQLIGIGKVQRDIKSTANQTTITLIGIDTALLGVVLNGNLKGAQITMWKGFFDTAGNLITTGGSGGLYQYFYGFINTFNIGEQWMEEVRMYVGTVTVSAANIQMILQNRTVGRFTNDASWEYFTPGDTSMNRVATISTIYYAFGQNS
Ga0248169_10096359	F007405	GGA	MTIGIAPKHEMTYAGAQVNIYHANKGEGLPQHSHSFSHATICHNGSCLVSLEGRSYTIDKNSTPLNLPAGEWHEIEALEDGTVFVNVFAEGKY
Ga0248169_10096361	F026565	AGG	MAMFSQNTITQVSGFDSPCIAGELVWEQQTYWNLDIVGSDGVTPLDLTSATIDAQIIRRTVTNLQDSRYGLSFDIGDYSPTPTPISLTITNEVAAQGKFTLVINDSTWGLMSDDPELDIGAQDCVAYSGRIKISFPASGSNPANDYIIFLLFLVRSDGIVVE