NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0248169_100820

Scaffold Ga0248169_100820


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_100820 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46566
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (70.73%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F008554Metagenome331Y
F023104Metagenome211Y
F029334Metagenome188Y
F034037Metagenome / Metatranscriptome175Y
F052344Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10082025F034037N/AMAGVNICMYANPRDYFPDQHNFEFIADIQWPGTHGQQLDWITGVTSIEHWLLNYTGPKHQRWAWHWAQECYHVGVAFKYDKHRTLFLLTWT
Ga0248169_10082034F029334AGGAGMLKELDTKEAGIFAFAAAMDAQRRNSNNKSLYSQEQVRKAVTARDLIDTAFVYTKLYINYRKTFIAVKAEGARRKDSMAREVLALFESNGYGVVSTPQGLIVRIDK
Ga0248169_10082039F052344N/AMAFIQYEVWIIRDQHEELIECVPTLREAEELAENEREFCDEVYILEDQDGDLKEIRRYQG
Ga0248169_10082049F000652GGAGMTGFESKRASALAKLKGAGMKKVQVQTLLTQELEVPDDWGREEVYDFLAEFQSFRTAFQGVSNEDQTARIVDLGVISEEVTEMGDEAYDD
Ga0248169_10082073F023104N/AMNILNLRFEFTNPFDRWDYFKNLGCLHGDMGMYKAWELEHTYYSPLLLDCELSLTHRCDHPGFEFGIGILGYGIHFRIYDTRHWNYDLNCLEERDYSEYFEINH
Ga0248169_10082079F008554N/AMTLEDEMIEQAAKQMSNELDREILWGMLQGMGWTRVMLPRLIDNHHAIDITYWLEDNCKHSYERNGRDFIFESQKDANWFILRWGTE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.