Basic Information | |
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Taxon OID | 3300022602 Open in IMG/M |
Scaffold ID | Ga0248169_100728 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | U.S. Department of Energy (DOE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 50310 |
Total Scaffold Genes | 71 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (71.83%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007405 | Metagenome | 351 | Y |
F036080 | Metagenome / Metatranscriptome | 170 | Y |
F037052 | Metagenome | 168 | Y |
F043202 | Metagenome | 156 | Y |
F058556 | Metagenome | 135 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0248169_10072812 | F058556 | AGGA | VSIFIVEHEVKGYPVFDTVRGVEDIDLTMFSPIKTLWVCDNEEEVIAVENELRRKHARSSQPS |
Ga0248169_10072815 | F036080 | GAG | MNPHIDLESAIMVAWQTSEDLDLLYKHHGDHPVPMTEDDVANALWGIKVLHDMRMEKLMDTYCRKMELDQYCTDPEKLAAREQLFKKGKKK |
Ga0248169_10072820 | F037052 | AGGTGG | VAAKKYVFKPEMCQRIIEMGKEGASQKMMFAEIGINKGVADTWKKNHPEFADALDSAVTNAQAYWEREILANVNNKGFNSRLAEIALRGQFQQDYRETRDIKLDAKVETKVDFAKEIADLLTALKG |
Ga0248169_10072846 | F007405 | GGA | MTVRIQPHHSFTYEGAQLGVYHANKGEGIPKHDHTYSHATICHNGSCLVSLEGRSYTINKNSQPLNLPAGEWHEIEALEDGTVFVNVFAEGKY |
Ga0248169_1007288 | F043202 | GGA | VTKISSSPSPLENRPYYVADTGHFGIKIKVCFSDHAFQEALKDSKITTKHHALDVGLAESHYIQQEGTTFAMMAIVFNWEDMAKLDPLERMGIIYHEVSHTTTHVFEYIGEEETKVGDESRSYLGEHIFKQVFAIYATEDQNRENSRKRNRTTPNKTSEEVLRALIKMGGNGDGSAGPDSVSKPKSVPRRTKNSNGSTKSKTSARIRRAG |
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