NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_100684

Scaffold Ga0248169_100684


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_100684 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52385
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (71.43%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003080Metagenome / Metatranscriptome508Y
F011665Metagenome / Metatranscriptome288Y
F015338Metagenome / Metatranscriptome255Y
F024559Metagenome / Metatranscriptome205Y
F026795Metagenome / Metatranscriptome196Y
F063276Metagenome129Y
F094804Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10068414F011665N/AMQNQINLTPLSQFTQLLRSAELSQQKEVKIPIAQARLLSLALSEIQDKLLQDYESMYNALKGHVQQEEVEIQLDGGGFEEPK
Ga0248169_10068422F003080AGGMTTAKDLTDQLIDRAKNLKEFIVEREFNDIPLQGVVRFSVQHTQGQLARIFVLALTQHEAEQMVDEWFGESV
Ga0248169_10068425F063276AGGAMSNTSIRENLDFYAVILLGFLGMIFAVWWNYSNPHLVVKYDCSIAEISPDYPIEVKEGCRKLRAKYSQEDLKKPK
Ga0248169_10068429F024559GGAGGMTSALLKLIFGIVLIIIAVVFGPLVGIWALNTLFPALAIPYTWQTWLAYFLLIAPITGVRFGSKK
Ga0248169_10068437F026795GAGGMAKNYKEINYFETRPDIVKIFDDLEAFHNYCRIELHPFDESHLYNRESWVWRNFEKSRRPKRPDGTRERKPYLGKNPRYNNDRISN
Ga0248169_10068471F094804AGGAMSTHEEAVQDIKKAKSVLDGDVIQAKKFFTHTSVSMIKSVFRIAAGLALAGGGWLEMNPYIQGAGLLLVIAEVLGIAEELV
Ga0248169_1006849F015338N/AMALKTGKPNPLNYFDLRRVEFACPHFKYTTLDRYNPNLLKSVDQWIRHNLNNRYYIGQGIELDNTNTIVYNTIIGFESEKELSFFTIACPLLQQR
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