Scaffold Ga0248169_100653

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_100653
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53731
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (81.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006890	Metagenome	362	Y
F013852	Metagenome / Metatranscriptome	267	N
F065407	Metagenome	127	Y
F094773	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_10065321	F013852	AGGAG	MGRSTFEGPILSGDNRFGPVRDVGYTDLVQTALLDFSVTSAGTNYGGGSGVFVASNNIPNSAATIYTPQSGVYSTNGPTKASAPTADATTLVYRGVVFYLPYSCNITDVILDIGTIPKDSAGTPLAVTAIQPYVSNNFATSTGVYATFANISSPAAQRYTATYVGSQLTNSNATLQDFQNLQPGQQPSWFSQVVVTLGMTTSAAGLSSGQVEVTLRYNQNDMNIGNTTTYPYGNFD
Ga0248169_10065331	F006890	GGAGG	MTPAQKEIYLVIEQWWAKFGFGPTIDDIMHITGDRGRGNVARKMKLLIEIGLCKGNTRRSRSIRPAHIRGKDICG
Ga0248169_10065353	F065407	AGGAG	MFTFEEQYKKYEQLNERTKQAYEFWINAVVSTWEDFFKPKKK
Ga0248169_10065367	F094773	GAG	MSDVIHNTMLDEKLKEDPSRKIALEIFHLLAPKADVETNTILSAVSMVLSTIAVEMGMEEEKAVYAFTKSFRHAKSRLKNIVRQVH