Scaffold Ga0248169

Basic Information
Taxon OID	3300022602 Open in IMG/M
Scaffold ID	Ga0248169_100503 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	U.S. Department of Energy (DOE)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022602 Open in IMG/M

Scaffold ID

Ga0248169_100503 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

U.S. Department of Energy (DOE)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	61586
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (32.31%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

61586

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (32.31%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.0412	Long. (^o)	-89.6861	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.0412

Long. (^o)

-89.6861

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009382	Metagenome / Metatranscriptome	318	Y
F009453	Metagenome / Metatranscriptome	317	Y
F010014	Metagenome	309	Y
F015306	Metagenome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_10050313	F009453	N/A	MATAGTLLSDLDSKAPVVSNDDDLVNKILADMNMPSSSNPIMTAPPPPSGNGSRMIQSPNPNTVYPMSNDPATATAHMIGKEYPSTADFANLMHAPSYSHGGSAYASVAPQQMMPPPTLVESKGNLYSDILSQIKQPLLVAIIIFLVSLPFLNVLIGHYVPSLLRIGGDVTTVGLAVKSIFGGFLFWFIQKVLVPLMTV
Ga0248169_10050326	F015306	N/A	MSRSINSTTPRFEKQKVPRFRRLDNDHISAIESLFQKFPFLRERVEIHMPFHRAKPTFSSGTVWLWPKFDKRPVGYLIFMDGFAPCIWYPERQEGMTFRWMLPPTFCQYGPTVCLANILSGESVLQIEDLAIWEGKDLWSNKVFSERWKSLSEFWSSLPADQPLLAFQPQIVQPIALKDWSLHYNSAIYWIIQPDHCRQPRWYWKDTVTVPDHPQVEFVAPQLKRNHEIVSTLCAYCTPYTKSVLPDTYSLLSQEQTPLGFASIGTLQLSLELRKRFADKIEGLPVEVTWNDNFKKYQIVRILPDNTPVATAGFFHHLHSA
Ga0248169_10050346	F009382	N/A	MEEYITNEFTKDTYPNLFTHPSFGTEYRGAREASLGSVKDSYPARDSRYPARAAAVEDGRLVTDYRPQCSKNVRTGQQFYTKKWMISHGSELMDESRRRQVEWTGAALPMANTMPPPAAVVHSTPFYSEVNPTNLLGGLGVERANATCPPMFGAFSYAPTISEMQNNRKNIAVTSREEGGRNSKRGQF
Ga0248169_10050360	F010014	N/A	MAQPVYPDLRTQSAVQSFPLPQFIGRTRREYDTKDSINARQFEHWQTDGKFMDNGRPDMNRQAPFYDMAPNVSRTSERSFRSQPRYDVEGERGGQNSFFDKYDTSSDSRNMTRELRASVYEDKNTGYTKESNKLLERNFDSRWLDTNVMKQQAQAAEELRPKMDDIRLFYLNKPSNSSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0248169_100503

Overview

Ecosystem & Geography

Associated Families

Sequences