NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_100492

Scaffold Ga0248169_100492


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_100492 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62710
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (76.12%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026556Metagenome / Metatranscriptome197Y
F063276Metagenome129Y
F070810Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10049260F026556GAGGLVSLSVGGILVMSLTSSVIKLLFGIALIIIALAIGPIIGIWALNTLFPEYLNIPLNWQTWLAFTVLFGGSVAGKFRK
Ga0248169_10049263F070810AGGMQETDVLWELKIPWHNQDNKWWNEACADVIEVFGLPGERFTSHPYEDCMLFRFKSKKDYQLCKVLLSDKI
Ga0248169_10049264F063276AGGAMQSIIKRQNLDFYIALVVGILGVAFAFYCNYTHPHIVVKYDCSIAEISPDYPVQVKETCRNLRAEKILQSPK

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