Scaffold Ga0248169_100443

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_100443
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65534
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (18.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029343	Metagenome	188	Y
F066397	Metagenome	126	Y
F070811	Metagenome	122	Y
F093285	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_10044337	F093285	N/A	MKFQELMESYGMIRQEKRIFYPRDFNLSKSFLKALKEELILQEKAGIAPDKFLHKLNRAMQFHISEHKKNLSPK
Ga0248169_10044339	F066397	N/A	MSKSTSIDINYLSYACDKQGTCAWSLSAGSSDIVQVPAPTDNSTVFLPSNPTSFASILKLADNAIINLSGLVVDQANENAVDANNKVSATLEGVFGNSTPGIGNQIFSVKGSSSVSIRGTLKGAGNRLKADVLVDNWSDQDYGPSTVDLTQAKHETGRKINVVYRIGSSKIIGNCNKLLLPSFGLTFYFYIKLIVRKVMSIKQGQKGPSWL
Ga0248169_10044354	F029343	N/A	METNNTNKVSLYEFSRWAALMEAVNIIADKCEDRGIDFNSQEGMKYIKPLDIQDYVNIRTDALMTKIKTARTIEKNLNNIKCLQIEKQLKHLEVVG
Ga0248169_10044375	F070811	N/A	MTTLEAITNSVHANYPHLLANNISIRDYCFWDCIRNCEIPVRELTEVKPYLIKHGIIDFTLVIFFSDNTIGYRLKI