Basic Information | |
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Taxon OID | 3300022602 Open in IMG/M |
Scaffold ID | Ga0248169_100415 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | U.S. Department of Energy (DOE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 68653 |
Total Scaffold Genes | 87 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (21.84%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F053079 | Metagenome / Metatranscriptome | 141 | Y |
F058734 | Metagenome / Metatranscriptome | 134 | Y |
F091108 | Metagenome | 107 | N |
F102502 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0248169_10041522 | F053079 | AGG | MDSKIQKLIELGIFTDPNTVRRETERNRFGVMVWDHKTGGSCQVLSGESFSNAKQYMAQPGHRSGIRKYGFKG |
Ga0248169_10041526 | F091108 | N/A | MKRKTSKKAETSSWKDLQCGIWERWNYRYCYLVIRQLDNGKFKPMIGAMGDLSMPGADLPSEGYHQLNTLEEAKEFLHKYVNYVRDVWDKQVIASKL |
Ga0248169_10041528 | F058734 | N/A | MQITIIGNVSEFTATEQKALYTDGADIYTGMYYVTADIEHFTVQGRNVTPNLPALRSLTSSANINWIVTTFRGKKIAFGSVTAN |
Ga0248169_10041570 | F102502 | N/A | MANNKQAKFERAVNNLKVTDKEKDKILETNEAIDTNLTKGLVRLEEYTSSELNLQGWKLTAVLDDILMCQYVDINEDGTMIKRGDLWVPINAVNQAWRVAKVLLAGPRAKVKPGQHIIFPSTFGLKASNINNLRHIVFLNEDRIFGIANPE |
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