NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_100196

Scaffold Ga0248169_100196


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_100196 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)102770
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (17.02%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053079Metagenome / Metatranscriptome141Y
F058734Metagenome / Metatranscriptome134Y
F078284Metagenome / Metatranscriptome116Y
F079412Metagenome115N
F091108Metagenome107N
F093285Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10019613F053079AGGMKDISKLIEMGILPDPNYVPRETVANRFGVMVWDHKTAGTCQVMTGESFGKAKQYMARPGHRSGIRKYGFRG
Ga0248169_10019614F079412N/AMINWDTLSLVYSTILDPIYKAKKKRNFVIRIRGVKNGRWNWYNYDSQGGYFVIVPDLRIGQFHRVIIHEFRHFVQDKILHVRISSDYEKLYYHHPIEIDARRFEYKGLHFARRLYNRIEKQKKVFKKLGKYRE
Ga0248169_10019618F091108AGGMNKAFLRRQAASKWKDLQCGIWERWDYRCCYLVIRQLNNGKFKPMIGAMGDLSMPGADLPPEGYHQLNTLDEAKNFLHKYVAYIREVWDKQVLDGRK
Ga0248169_10019619F058734N/AMQITIIGNVNELTAAEQKALYNDGADITTGIYYLVADAKDFVSQGKEVLPNLPALRSLSAAANISWIITSFRGNKVAFGSVTAA
Ga0248169_1001964F078284N/AMTAETPINNTEVTKKRRAPSAKRAATKAQKEQSRGFPLPLYLTCPVTKKTNKYTSLAYIRKLIAKHGTIEEVQKTYVSAEGKKLQNNKQS
Ga0248169_10019693F093285N/AMKFQELLEQYGMIKKEQRMFYPKNFNLSEGFLKALKEEIALQEKAGIDANKFAHKLNRALQFHINEHKKNLPPK
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