NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_100182

Scaffold Ga0248169_100182


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_100182 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)106920
Total Scaffold Genes167 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)121 (72.46%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019426Metagenome229Y
F028070Metagenome / Metatranscriptome192Y
F028168Metagenome192Y
F052985Metagenome / Metatranscriptome141Y
F054522Metagenome / Metatranscriptome139Y
F071905Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_100182132F052985N/AMSLMAKHPPVGSASWHSVFANDECKVWQDGNDDIFFKVAIKGQRVKYFYNETAHSDVARYCSDELGISYWSVLN
Ga0248169_100182135F054522AGGAMIVKLQVPNNAQMGYGLGKCIQYGIEYNVLDNLQVELTGTDEIKLTKMCVAFMGKVLEVSKTKPTLGDLPKHEVQYARTNRPIQTRRK
Ga0248169_1001822F028070N/AMAKINYTKEMAKKIREIKPPVRNLLLDIRDRPNYLALTVYESNIMEYNESDRMAIMNYLLLVRKLIQSFGVPCELEGMKYTDEQLRRRRRSK
Ga0248169_10018234F071905AGGAGGMAKSTKLWENKDWVFKRYVVEKKTVLDMAMEAKCSHMTIQRALERFDLIKKPRKWTK
Ga0248169_10018240F028168AGGAMTDKPVIELISELTEFNDMKSYMNDADLDYALDLIIKLIAKPDVPSTKAPDLIVKMQALAAKFAIMSRYYTTFEKGGENSKKKNVYYTAEEAINRLVDALKYSARFGA
Ga0248169_1001826F019426GGAMCFRKEIMRALVFGSKEWTDYNDLVRQVTLLLEDNKHHYPDDKEFVFVHKGNQGAENMITEYIGKVEKLLKQKGYKIKEELVRDKSSFSDVTMIESEPTIALVFGESSRNKQAISLLKTYGIPYRYFKE
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