Basic Information | |
---|---|
Taxon OID | 3300022602 Open in IMG/M |
Scaffold ID | Ga0248169_100182 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | U.S. Department of Energy (DOE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 106920 |
Total Scaffold Genes | 167 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 121 (72.46%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae | (Source: IMG-VR) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F019426 | Metagenome | 229 | Y |
F028070 | Metagenome / Metatranscriptome | 192 | Y |
F028168 | Metagenome | 192 | Y |
F052985 | Metagenome / Metatranscriptome | 141 | Y |
F054522 | Metagenome / Metatranscriptome | 139 | Y |
F071905 | Metagenome | 121 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0248169_100182132 | F052985 | N/A | MSLMAKHPPVGSASWHSVFANDECKVWQDGNDDIFFKVAIKGQRVKYFYNETAHSDVARYCSDELGISYWSVLN |
Ga0248169_100182135 | F054522 | AGGA | MIVKLQVPNNAQMGYGLGKCIQYGIEYNVLDNLQVELTGTDEIKLTKMCVAFMGKVLEVSKTKPTLGDLPKHEVQYARTNRPIQTRRK |
Ga0248169_1001822 | F028070 | N/A | MAKINYTKEMAKKIREIKPPVRNLLLDIRDRPNYLALTVYESNIMEYNESDRMAIMNYLLLVRKLIQSFGVPCELEGMKYTDEQLRRRRRSK |
Ga0248169_10018234 | F071905 | AGGAGG | MAKSTKLWENKDWVFKRYVVEKKTVLDMAMEAKCSHMTIQRALERFDLIKKPRKWTK |
Ga0248169_10018240 | F028168 | AGGA | MTDKPVIELISELTEFNDMKSYMNDADLDYALDLIIKLIAKPDVPSTKAPDLIVKMQALAAKFAIMSRYYTTFEKGGENSKKKNVYYTAEEAINRLVDALKYSARFGA |
Ga0248169_1001826 | F019426 | GGA | MCFRKEIMRALVFGSKEWTDYNDLVRQVTLLLEDNKHHYPDDKEFVFVHKGNQGAENMITEYIGKVEKLLKQKGYKIKEELVRDKSSFSDVTMIESEPTIALVFGESSRNKQAISLLKTYGIPYRYFKE |
⦗Top⦘ |