NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_100099

Scaffold Ga0248169_100099


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_100099 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)140720
Total Scaffold Genes177 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (14.12%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029343Metagenome188Y
F048689Metagenome147N
F059596Metagenome133N
F070809Metagenome122N
F091107Metagenome107N
F093285Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_100099112F093285N/AMKFQQLMESYGLIKQEKRMFYPRDFNLTKDFLKALTKELEVQEKAGITPEKFAHKLNRALQWHISDYSERKKQK
Ga0248169_100099132F029343N/AMDYNTVEATTNKITLYEFARWAALLEAVDIIADKCEDKGINFDSPEGMKFIKPLDIQDYVNRRTDTLIMKFKTAKDIEHNLYSIKCLQIEKQLKRLEVSE
Ga0248169_10009916F048689AGTAGMNKKQIVITTEEWLKLPRSEKVPCKWYWPTGWYEAPFAMMMNDWDNWEKHIKKEYPVQYWLRENFQYTFRQLYRTVKGLKRYIINPRRRMRKAVFPVQYMDLVELVPHFHFQAIIEFVEVEKTFEVTDWSEESISEKGKKLKELYNYVKYERPFLLEKLSMAYEKVEITIEYDPNRYDRVDVINKEIKDRDTELCIWVIQNRDILWT
Ga0248169_10009943F091107N/AMTLLEAFKHVQYFADNYYQGSVTKAVAALEASHEHITDDSKEALTLFKEWQQRMNNWLEYVK
Ga0248169_10009950F070809N/AMSNFNCEQYVLDNYGEEIVDMFVEEYGIYATTYLYSLTQDEVDDVLAKY
Ga0248169_10009953F059596N/AMSNNKREVKLINCNLLDVKNNKLIKMEGYVKIVNYDNKEYFEVNLRDGDFNNEKYILIGSNEKFKIFGKDDDGGYFVI
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