Scaffold Ga0248169

Basic Information
Taxon OID	3300022602 Open in IMG/M
Scaffold ID	Ga0248169_100037 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	U.S. Department of Energy (DOE)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022602 Open in IMG/M

Scaffold ID

Ga0248169_100037 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

U.S. Department of Energy (DOE)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	197342
Total Scaffold Genes	191 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	116 (60.73%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

197342

Total Scaffold Genes

191 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

116 (60.73%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.0412	Long. (^o)	-89.6861	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.0412

Long. (^o)

-89.6861

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014361	Metagenome / Metatranscriptome	263	Y
F015306	Metagenome	255	Y
F016120	Metagenome / Metatranscriptome	249	Y
F029976	Metagenome / Metatranscriptome	186	Y
F057120	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_100037123	F014361	N/A	MSVLGAFTTQLVNLFDELCATYPEDREIRMATEAIKGAKKINPRLILDLFVQHVYKESSQAIYNRDAVQFRQMAQHKISTQFNEMVVALSVFDKYWDTMGQANQDVIWKYLKVLCVLAEKAQKE
Ga0248169_100037151	F015306	N/A	MLSLQPHQSPLTTSEQHGEQKKLPRFRRLDNNHISAIESLFTIHPFLKDRVEIHMPFARAAPTFRNQAIWLWPKFDKRPVGYLIFLDGFAPCIWFPERQEGLTFRWMLPPSFCALGPTVCLANILAGESVLQLEDIVVHDGEDLWSRRVFSERWEALRAFWATLPPHQPFLAFTPRVVEPITLADWPQHYNASLYWTIQADYARQPRWYWKDVVTAPAHAPQKYIAPVLKRSHDIAQLLCALCMPYRKTALPDTYELEAQDGEVLGLASIRDLSMSQRLRAHFKAKPMEGLAVEVVWNNTFRKYQIMRIMPEGTPITTIGFFHHGQSTTAPVETGF
Ga0248169_1000374	F057120	AGG	MDSLQHLTDKIPNNILCGYFYVFFIIFAVWAALALLGGIWVFTTSKMTLGMMVSVLLNILLSFGISATSALFLYLICERALKPHAEQKAKAHL
Ga0248169_10003759	F016120	N/A	MSLPPVHRQTIDEATAEAEARPLDYQPAQRAAYIRSMLRDIPRWAAQGESEEAIRQRVPAFVESYPELFKKIIRGQDLGPIQTMLQMLDRMAKGGISQHQASIVVGKKLVDQFVMPQLKSKP
Ga0248169_10003787	F029976	GAG	MTWLRETPYSLHYDPVHESAREIQGNDLGQRKNVKDWAIRRRVPTVVMIDHGTVSETAKASVFDEDLINLRMLKVQSILQGNLWGFNHWGGMAYSN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0248169_100037

Overview

Ecosystem & Geography

Associated Families

Sequences