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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022602 Open in IMG/M |
| Scaffold ID | Ga0248169_100026 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | U.S. Department of Energy (DOE) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 216673 |
| Total Scaffold Genes | 212 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 158 (74.53%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011665 | Metagenome / Metatranscriptome | 288 | Y |
| F026795 | Metagenome / Metatranscriptome | 196 | Y |
| F034037 | Metagenome / Metatranscriptome | 175 | Y |
| F036702 | Metagenome | 169 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0248169_100026103 | F036702 | N/A | MTTTKFYDPTSISNINIPNEITGIPSIDWKYNPIALAPGAYATSKKPLYTVSGLWMEKFLSNTSQLWCTGYKIPSSSGTIVGIELQLNIQRQARIEDLIIQLTLNGQLIGNNYASTINPVQSDMYTGELLEPLNPVGDLSIYGGPADLWGTTLTAANVADPTFGVVVSFKSNVIYPHSDTAYLDQASLRITYA |
| Ga0248169_100026147 | F011665 | AGG | MQNQINLTPLTQFAQILRAAELSQSKEVKMTIQQARLLGLALVEIQDKVNRDYESMFNSLKGYVSQEEVQIEIDGGGFSDK |
| Ga0248169_100026168 | F026795 | GAGG | MAKNYKEISYFSTRPDIVKIFDDLEAFHNWCRLELHPFDESHLYNRESWVWRNFEKSRRPKKPFTGERKPYLGKNPRYNNDRISN |
| Ga0248169_10002636 | F034037 | GGAG | MSLARYFPDIHGFEFIADVAWPGVIGEQLDWVSGVMDVEQWLLNYTGPKYERWAWHRATECYHIGVAFKYDKHRTLFLLNWN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |