Scaffold Ga0248169_100015

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_100015
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 284478
• Total Scaffold Genes: 346
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 234 (67.63%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F023777	Metagenome / Metatranscriptome	208	Y
F025012	Metagenome / Metatranscriptome	203	Y
F082065	Metagenome / Metatranscriptome	113	Y
F096611	Metagenome / Metatranscriptome	104	Y
F098538	Metagenome / Metatranscriptome	103	Y
F098630	Metagenome / Metatranscriptome	103	Y
F100948	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_100015156	F023777	N/A	MAVKSWYLSIIDSSTHKPVLHKMFFTAPVMNAFIKEQEILEKYPKPQYYIVKENY
Ga0248169_100015264	F000652	GGAGG	MKTVRVETLLTQELEVPDNWEREDVFDFLAENQSFRTAFQGVSNEEQTARIVDLGVVEEKVTEMGEEAYDE
Ga0248169_100015266	F025012	AGGAG	MTTEQRNYFIRRLDEITADKIKAKATELYGPAGRPESPTWGTVFAAIKAGEITLKEGTEDNTNAYLTPNDVVWPAMEAKKAELDAYKATLKAERQKALDAVMLDATASEALANYEAL
Ga0248169_100015290	F096611	N/A	MRAHEFITEKTSAALCHSGRRLGRSDYASCVSQGLRAHTSKGKGHTDGKGHYLKGKKKKSTKYGGDVPDYS
Ga0248169_10001535	F098630	AGGA	MPEEKKSKNPFIAAAQAAKAAAGNPSVPGAKTSQVQQAKFHNQVQGKKPATRSAGRGR
Ga0248169_10001539	F100948	AGG	MHIQKFLEQDVSKQLEKACIWGLRLHYLASDLRTFANEIGAKDLETLEQYHWFNQHFGPGFGAGQGYRTASNENYNNLGYCIRETQSNVLNTTEKKGNLGADLVTGFALGHMLATGRAGLTTDDFHTKEGGFHCEHNFQVNHIKKLLLEKLLTKNKIDPKSLVRFVIDHSLVVTVHNSERKDGGSNMNKNIAPFWRYANVGANVLQYTDDGFEDVTNATINEINSNRWNRNKYFKEFRNSFESIAQDTIDQFRNEVYNSTYMKEPCSSTSPILNEANLKLLVKNDPAAIAKAFYPDKFKDRWKKGK
Ga0248169_10001598	F082065	N/A	MKKLLLAVALLLSGCAAIQEQIPSFWDPNQSKIVTDIQQTTRHIDCTADLKPQLVTLYNQVEWYDLYAQTKPTYDMQKLDKLMVTTIKEFQDKVNAGPVSPLYCDLKKKILIQQGDIIAKTVQGRF
Ga0248169_10001599	F098538	AGGA	MSDTLNQVATSGDQWAAERAQYALQVQQAVSAGQMSTSEAKEVLQDLINTQQLQEQANADHVKAALFFGITQLISFYA