NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0216345_10059189

Scaffold Ga0216345_10059189


Overview

Basic Information
Taxon OID3300022601 Open in IMG/M
Scaffold IDGa0216345_10059189 Open in IMG/M
Source Dataset NameGoat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 2, Chloramphenicol (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3009
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.4148Long. (o)-119.8405Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102214Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0216345_100591896F102214GGAGGMTEAEKRALALQIMQQEQQRLASTSFHDYKHAAIADLHHEITTRQQYYNDFAQQGITFQEFQKAYSDAYEQGRTDMLAYRFSFFYASTAIAYHEIFSATPEDVATFMKALPKAPEECKNRAELVQRCVDETGFDPSFADEKKAEARVTRRDRAAVDRMRKTGITERDLAIEREEGYRDGRNEPFYLSSCYAAVALVLHDQHGCGPEEIESFLDRVAEICDEEISVEDIIERAQQEAGVDVSEMAHISN

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