NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236342_1021552

Scaffold Ga0236342_1021552


Overview

Basic Information
Taxon OID3300022592 Open in IMG/M
Scaffold IDGa0236342_1021552 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1751
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021717Metagenome217Y
F055423Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0236342_10215521F055423GGAMRAKEIYPKYKLWTAPVKIKQPNYVGYIDVTVTAANMTDARRLMRAQYGVEEWQVGSVKEVK
Ga0236342_10215524F021717AGGAMRLHEFVDLTEDGGASVGSTCAGSIAPVAVPLGGMITRNGGSFFSGTKYTTDDATPNTPAEYKRYKRKK

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