Scaffold Ga0236342_1004161

Overview

Basic Information

• Taxon OID: 3300022592
• Scaffold ID: Ga0236342_1004161
• Source Dataset Name: Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5980
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F013757	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236342_10041611	F013757	N/A	LIHTKKDIKMLTQCIAKAKLVYNKRLQSYKLVVAFNAHKRIVKKGTTEVVKYSFPTQAKCAYVSGDLLAKNLQAELASVMPSVYKTLRTNSVEFVE
Ga0236342_10041619	F000652	GAG	MTGFNSKRAMAQDKLKEPGMKRVIVETLITQELEVPASWDRYDVYDFLAEYQSFRTAFQGVSNTDQTARIVDLGVVEETVTEMGEESFDE