Scaffold Ga0236341_1023007

Overview

Basic Information

• Taxon OID: 3300022591
• Scaffold ID: Ga0236341_1023007
• Source Dataset Name: Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1866
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015302	Metagenome	255	Y
F030333	Metagenome	185	Y
F034448	Metagenome	174	Y
F040990	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_10230072	F030333	N/A	MVGERNPQLTVSVKTSSHYTECEPWCMCNIGNWNVTWWRDFPDIAMSVALGQGPQPETYWFANEQDALMFRLKFQ
Ga0236341_10230073	F034448	N/A	MHVNNYTLPRPPEQALNQCHLVVVNDPVFRMWAMKKFCREQKLSLIWSELVDTTDVSAYFDEAAAFYFIDPADATLFRLKFK
Ga0236341_10230074	F015302	GGTGG	MSRDEYYVDAAARLDTIIGGDTQHFLRLQRVKNEYDILARAVPIGQGFLTFDDYVREYYGVKLQFDGDNVTLAYSVVDEKKYTMFLLKFNR
Ga0236341_10230075	F040990	AGCAGG	MNYYYEIDPKYDGTIFGDTWRYWCMANCSPADNGKMCFKTHDEFIARSSRVWVENVNGVYQVKPDWYGMRVQVDPHEFTMVKLRAKTIKWWHDEPR