Scaffold Ga0236341_1020496

Overview

Basic Information

• Taxon OID: 3300022591
• Scaffold ID: Ga0236341_1020496
• Source Dataset Name: Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2030
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F006264	Metagenome / Metatranscriptome	377	Y
F103134	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_10204963	F103134	GAGG	MSGYGKVINGGAKMSKGLTKGINDKLSGRSKEDDRRAVVAGAVRQAFTVRHLSDQTTNNVKGGTFKSTKEHAKVQV
Ga0236341_10204965	F001059	AGGA	MATYDIEALKADLPTAKDLAQFVYDKTEGAISLDLIGKPKEDQYQVAKNALEGKKVPAEFMTGHNPYVEKKDTIPEDPLRTMPPRDPSLPDPDAQVHYFGATNMPHPLDPQSDKKVYIDFRKYENGLITYTITGPVEQVPVGEKLNKYGQTVPEKYTWIDPRTPETVMRNADGTFTKEGRGLHTYCVGEKGSGIWSMIDRDMVTVTAKNIANPWA
Ga0236341_10204966	F006264	N/A	MEDLSAIFRQRLSGQAEVCARKTLEWLQKDLQSEQKLQPDEIHYLAMAAQILLVIRDRYGKK