Scaffold Ga0236341

Basic Information
Taxon OID	3300022591 Open in IMG/M
Scaffold ID	Ga0236341_1015452 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Laval University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022591 Open in IMG/M

Scaffold ID

Ga0236341_1015452 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Laval University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2494
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2494

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location Name	SAS2a, Kuujjuarapick, Canada
Coordinates	Lat. (^o)	55.1491	Long. (^o)	-77.4866	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

SAS2a, Kuujjuarapick, Canada

Coordinates

Lat. (^o)

55.1491

Long. (^o)

-77.4866

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003521	Metagenome / Metatranscriptome	481	Y
F005449	Metagenome / Metatranscriptome	400	Y
F016785	Metagenome / Metatranscriptome	244	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_10154521	F016785	N/A	XRKDTKDIKMLDKQNIIVESLESPPGNKGIEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIAVSNSTEPVRGIDYISPVVSPGIDYSTAVITKCLMPNGKINFEFERFSESDEPGARQAAKMALHFLNSKNDSYQIVRDWAQDSLLHKCGVVMVSPVREQITQYKEVEGTRDMLRTFEIMATEKGLIAKRQQMRRIDVDLQGVMQETMMPDETGIPQEPTADEMQDAIKNNTKYRAKYKLTGYSTNIQIKHVAQHYFVCNPTIPGIRKQDFCGFYDPMTIHEAKAQYPYIDLEKFAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRFSRVVMLTTAWLRRDIDNDGEEETIEICY
Ga0236341_10154522	F005449	AGG	LYVKEVDFIPLAVMVPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFAMQASTPRIGVNPEFIDAEEIQRGVSALFVLDRKFDPTKHVYEFAPMQGNLEYVQDAMQRFDQDTSRMLGMTNPADTLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLKDLIYIVWKTMIQYSDDYNIHQLAEAMLPGAGFLDAKSMENFEFIDRNMINVDLALGFLSEENRLTRQQLITQAQSQFAQAVAQLDPNVPELFAKVRRPFEDTLYALGVKNCDAYLPTMEEAAKMAQSKAQQPPSPEQEEIKSKTALNNAKVQESKTVSDLNMKKAEDIDTDNMFEMMAAKRGKLSAVEID
Ga0236341_10154523	F003521	AGGA	MKSLVKNVREFFNRRTKATDAYKEAHVERRTLVIQNGEAATRLMLNEDFALMFNLYRFNMLEKLEEATSDEERIGNAYYFAGGRDFIDFIEKSEY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0236341_1015452

Overview

Ecosystem & Geography

Associated Families

Sequences