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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022591 Open in IMG/M |
| Scaffold ID | Ga0236341_1005443 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Laval University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5360 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | SAS2a, Kuujjuarapick, Canada | |||||||
| Coordinates | Lat. (o) | 55.1491 | Long. (o) | -77.4866 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002260 | Metagenome / Metatranscriptome | 577 | Y |
| F003807 | Metagenome | 467 | Y |
| F011761 | Metagenome / Metatranscriptome | 287 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0236341_10054432 | F011761 | AGGA | MAYVLNGANGEANGFTFAIASFALRAMHESQGLVNMTNVVAPTQGNQFLVPNFAPITYQNYNPNGTGGTYGTGNATVQNPSLTQTNITAIPAVAQTAFDIFYGWTTSFQLAATLGAELGDSFAEKVDQSVTSGFIGNGVTEGAVGSTTGFKATPTNVYYPQSADGFYRVLQLGALELLPSGANLNITGNIANGGVAGFTTNSVLSLVREAKQQFKVARMPGAPVIVLDSNGNVTEATAGSVGGSGSSFTRLLAELTGGAVSGPSSGGSNLSALGNELLTTGKIENVYGCMVMFTTFLQHTSRTIAGTATTPCLVGAYFGDSAMFTVMKQGLEIKIGEVPGGLQNWLTGVGYFGAGVGDQRRGGAINIVQDV |
| Ga0236341_10054433 | F002260 | AGGA | MSVPYQRISNATAQDIAFYDPAASRRAQALGVDWEPYFKVGSQEWLYKLEFGWWNKYCDTVLGAYYYTNLPNGALISSFNPSQLIKSDQTLIRLDVFGAVLVFYESLVTEVSNMNDVDKMNYDFAKDRCDREWIKALELMNFYDLYQNSPNGPTTKLEENWTADVDYFNGDRRFF |
| Ga0236341_10054436 | F003807 | N/A | MNEQNSVWLKTNEEKLRSLIGDEAKMMPMLDNMMATIKQLKAKQAFRLALLNQLLEDANDLD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |